Package: rMSA 0.99.1

rMSA: Interface for Popular Multiple Sequence Alignment Tools

Seamlessly interfaces the Multiple Sequence Alignment software packages ClustalW, MAFFT, MUSCLE and Kalign (downloaded separately) and provides support to calcualte distances between sequences. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Authors:Michael Hahsler, Anurag Nagar

rMSA_0.99.1.tar.gz
rMSA_0.99.1.zip(r-4.5)rMSA_0.99.1.zip(r-4.4)
rMSA_0.99.1.tgz(r-4.4-any)
rMSA_0.99.1.tar.gz(r-4.5-noble)rMSA_0.99.1.tar.gz(r-4.4-noble)
rMSA_0.99.1.tgz(r-4.4-emscripten)
rMSA.pdf |rMSA.html✨
rMSA/json (API)

# Install 'rMSA' in R:
install.packages('rMSA', repos = c('https://mhahsler.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mhahsler/rmsa/issues

On CRAN:

geneticssequencinginfrastructurealignmentbioinformaticssequence-alignment

3.70 score 10 stars 7 scripts 27 exports 27 dependencies

Last updated 7 months agofrom:4772797ab6. Checks:OK: 3 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 19 2024
R-4.5-winNOTEDec 19 2024
R-4.5-linuxNOTEDec 19 2024
R-4.4-winOKDec 19 2024
R-4.4-macOKDec 19 2024

Exports:boxshadeboxshade_helpc2sclustalclustal_helpdistAlignmentdistApedistCVdistEditdistFFPdistKMerdistNSVdistSimRankkalignkalign_helpmafftmafft_helpmusclemuscle_helpmutationsplot.DNAMultipleAlignmentplot.DNAStringSetplot.RNAMultipleAlignmentplot.RNAStringSetrandom_sequencess2csimRank

Dependencies:apeaskpassBiocGenericsBiostringscrayoncurldigestgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitelatticemimenlmeopensslproxypwalignR6RcppS4VectorsseqLogosysUCSC.utilsXVectorzlibbioc

Interface to Popular Multiple Sequence Alignment Tools

Rendered fromrMSA.Rnwusingutils::Sweaveon Dec 19 2024.

Last update: 2015-10-06
Started: 2015-10-06