Package: rMSA 0.99.1

rMSA: Interface for Popular Multiple Sequence Alignment Tools

Seamlessly interfaces the Multiple Sequence Alignment software packages ClustalW, MAFFT, MUSCLE and Kalign (downloaded separately) and provides support to calcualte distances between sequences. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Authors:Michael Hahsler, Anurag Nagar

rMSA_0.99.1.tar.gz
rMSA_0.99.1.zip(r-4.5)rMSA_0.99.1.zip(r-4.4)
rMSA_0.99.1.tgz(r-4.4-any)
rMSA_0.99.1.tar.gz(r-4.5-noble)rMSA_0.99.1.tar.gz(r-4.4-noble)
rMSA_0.99.1.tgz(r-4.4-emscripten)
rMSA.pdf |rMSA.html✨
rMSA/json (API)

# Install 'rMSA' in R:
install.packages('rMSA', repos = c('https://mhahsler.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mhahsler/rmsa/issues

On CRAN:

bioinformaticssequence-alignment

27 exports 9 stars 1.16 score 26 dependencies 5 scripts

Last updated 4 months agofrom:4772797ab6. Checks:OK: 3 WARNING: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 20 2024
R-4.5-winOKAug 20 2024
R-4.5-linuxOKAug 20 2024
R-4.4-winWARNINGAug 20 2024
R-4.4-macWARNINGAug 20 2024

Exports:boxshadeboxshade_helpc2sclustalclustal_helpdistAlignmentdistApedistCVdistEditdistFFPdistKMerdistNSVdistSimRankkalignkalign_helpmafftmafft_helpmusclemuscle_helpmutationsplot.DNAMultipleAlignmentplot.DNAStringSetplot.RNAMultipleAlignmentplot.RNAStringSetrandom_sequencess2csimRank

Dependencies:apeaskpassBiocGenericsBiostringscrayoncurldigestGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitelatticemimenlmeopensslproxypwalignR6RcppS4VectorsseqLogosysUCSC.utilsXVectorzlibbioc

Interface to Popular Multiple Sequence Alignment Tools

Rendered fromrMSA.Rnwusingutils::Sweaveon Aug 20 2024.

Last update: 2015-10-06
Started: 2015-10-06