Package: rMSA 0.99.1

rMSA: Interface for Popular Multiple Sequence Alignment Tools

Seamlessly interfaces the Multiple Sequence Alignment software packages ClustalW, MAFFT, MUSCLE and Kalign (downloaded separately) and provides support to calcualte distances between sequences. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Authors:Michael Hahsler, Anurag Nagar

rMSA_0.99.1.tar.gz
rMSA_0.99.1.zip(r-4.5)rMSA_0.99.1.zip(r-4.4)
rMSA_0.99.1.tgz(r-4.5-any)rMSA_0.99.1.tgz(r-4.4-any)
rMSA_0.99.1.tar.gz(r-4.5-noble)rMSA_0.99.1.tar.gz(r-4.4-noble)
rMSA_0.99.1.tgz(r-4.4-emscripten)
rMSA.pdf |rMSA.html✨
rMSA/json (API)

# Install 'rMSA' in R:
install.packages('rMSA', repos = c('https://mhahsler.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mhahsler/rmsa/issues

On CRAN:

geneticssequencinginfrastructurealignmentbioinformaticssequence-alignment

3.78 score 12 stars 7 scripts 27 exports 26 dependencies

Last updated 9 months agofrom:4772797ab6. Checks:3 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 17 2025
R-4.5-winNOTEFeb 17 2025
R-4.5-macNOTEFeb 17 2025
R-4.5-linuxNOTEFeb 17 2025
R-4.4-winOKFeb 17 2025
R-4.4-macOKFeb 17 2025

Exports:boxshadeboxshade_helpc2sclustalclustal_helpdistAlignmentdistApedistCVdistEditdistFFPdistKMerdistNSVdistSimRankkalignkalign_helpmafftmafft_helpmusclemuscle_helpmutationsplot.DNAMultipleAlignmentplot.DNAStringSetplot.RNAMultipleAlignmentplot.RNAStringSetrandom_sequencess2csimRank

Dependencies:apeaskpassBiocGenericsBiostringscrayoncurldigestgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitelatticemimenlmeopensslproxypwalignR6RcppS4VectorsseqLogosysUCSC.utilsXVector

Interface to Popular Multiple Sequence Alignment Tools

Rendered fromrMSA.Rnwusingutils::Sweaveon Feb 17 2025.

Last update: 2015-10-06
Started: 2015-10-06