Package: rMSA 0.99.1

rMSA: Interface for Popular Multiple Sequence Alignment Tools

Seamlessly interfaces the Multiple Sequence Alignment software packages ClustalW, MAFFT, MUSCLE and Kalign (downloaded separately) and provides support to calcualte distances between sequences. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Authors:Michael Hahsler, Anurag Nagar

rMSA_0.99.1.tar.gz
rMSA_0.99.1.zip(r-4.5)rMSA_0.99.1.zip(r-4.4)rMSA_0.99.0.zip(r-4.3)
rMSA_0.99.1.tgz(r-4.4-any)rMSA_0.99.0.tgz(r-4.3-any)
rMSA_0.99.1.tar.gz(r-4.5-noble)rMSA_0.99.1.tar.gz(r-4.4-noble)
rMSA_0.99.1.tgz(r-4.4-emscripten)rMSA_0.99.0.tgz(r-4.3-emscripten)
rMSA.pdf |rMSA.html
rMSA/json (API)

# Install rMSA in R:
install.packages('rMSA', repos = c('https://mhahsler.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mhahsler/rmsa/issues

On CRAN:

bioinformaticssequence-alignment

27 exports 9 stars 1.16 score 26 dependencies

Last updated 27 days agofrom:4772797ab600332496167a20791f0a26c3b711e3

Exports:boxshadeboxshade_helpc2sclustalclustal_helpdistAlignmentdistApedistCVdistEditdistFFPdistKMerdistNSVdistSimRankkalignkalign_helpmafftmafft_helpmusclemuscle_helpmutationsplot.DNAMultipleAlignmentplot.DNAStringSetplot.RNAMultipleAlignmentplot.RNAStringSetrandom_sequencess2csimRank

Dependencies:apeaskpassBiocGenericsBiostringscrayoncurldigestGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitelatticemimenlmeopensslproxypwalignR6RcppS4VectorsseqLogosysUCSC.utilsXVectorzlibbioc

Interface to Popular Multiple Sequence Alignment Tools

Rendered fromrMSA.Rnwusingutils::Sweaveon May 22 2024.

Last update: 2015-10-06
Started: 2015-10-06