Package: rMSA 0.99.1

rMSA: Interface for Popular Multiple Sequence Alignment Tools

Seamlessly interfaces the Multiple Sequence Alignment software packages ClustalW, MAFFT, MUSCLE and Kalign (downloaded separately) and provides support to calcualte distances between sequences. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Authors:Michael Hahsler, Anurag Nagar

rMSA_0.99.1.tar.gz
rMSA_0.99.1.zip(r-4.5)rMSA_0.99.1.zip(r-4.4)
rMSA_0.99.1.tgz(r-4.4-any)
rMSA_0.99.1.tar.gz(r-4.5-noble)rMSA_0.99.1.tar.gz(r-4.4-noble)
rMSA_0.99.1.tgz(r-4.4-emscripten)
rMSA.pdf |rMSA.html✨
rMSA/json (API)

# Install 'rMSA' in R:
install.packages('rMSA', repos = c('https://mhahsler.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mhahsler/rmsa/issues

On CRAN:

geneticssequencinginfrastructurealignmentbioinformaticssequence-alignment

27 exports 10 stars 1.24 score 26 dependencies 6 scripts

Last updated 4 months agofrom:4772797ab6. Checks:OK: 3 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 19 2024
R-4.5-winNOTESep 19 2024
R-4.5-linuxNOTESep 19 2024
R-4.4-winOKSep 19 2024
R-4.4-macOKSep 19 2024

Exports:boxshadeboxshade_helpc2sclustalclustal_helpdistAlignmentdistApedistCVdistEditdistFFPdistKMerdistNSVdistSimRankkalignkalign_helpmafftmafft_helpmusclemuscle_helpmutationsplot.DNAMultipleAlignmentplot.DNAStringSetplot.RNAMultipleAlignmentplot.RNAStringSetrandom_sequencess2csimRank

Dependencies:apeaskpassBiocGenericsBiostringscrayoncurldigestGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitelatticemimenlmeopensslproxypwalignR6RcppS4VectorsseqLogosysUCSC.utilsXVectorzlibbioc

Interface to Popular Multiple Sequence Alignment Tools

Rendered fromrMSA.Rnwusingutils::Sweaveon Sep 19 2024.

Last update: 2015-10-06
Started: 2015-10-06