Package: rBLAST 1.1.1
rBLAST: R Interface for the Basic Local Alignment Search Tool
Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.
Authors:
rBLAST_1.1.1.tar.gz
rBLAST_1.1.1.zip(r-4.5)rBLAST_1.1.1.zip(r-4.4)rBLAST_1.1.1.zip(r-4.3)
rBLAST_1.1.1.tgz(r-4.4-any)rBLAST_1.1.1.tgz(r-4.3-any)
rBLAST_1.1.1.tar.gz(r-4.5-noble)rBLAST_1.1.1.tar.gz(r-4.4-noble)
rBLAST_1.1.1.tgz(r-4.4-emscripten)rBLAST_1.1.1.tgz(r-4.3-emscripten)
rBLAST.pdf |rBLAST.html✨
rBLAST/json (API)
NEWS
| # Install 'rBLAST' in R: |
| install.packages('rBLAST', repos = c('https://mhahsler.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mhahsler/rblast/issues
On BioConductor:rBLAST-1.1.1(bioc 3.20)rBLAST-1.0.0(bioc 3.19)
geneticssequencingsequencematchingalignmentdataimportbioconductorbioinformaticsblast-search
Last updated 7 months agofrom:39e28cec59. Checks:OK: 7. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win | OK | Oct 27 2024 |
| R-4.5-linux | OK | Oct 27 2024 |
| R-4.4-win | OK | Oct 27 2024 |
| R-4.4-mac | OK | Oct 27 2024 |
| R-4.3-win | OK | Oct 27 2024 |
| R-4.3-mac | OK | Oct 27 2024 |
Exports:blastblast_db_cacheblast_db_getblast_helphas_blastmakeblastdb
Dependencies:askpassBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpurrrR6rlangRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Basic Local Alignment Search Tool (BLAST) | BLAST blast blast_help has_blast predict.BLAST print.BLAST |
| Manage BLAST Database Downloads using BioCFileCache | blast_db_cache blast_db_get |
| Create BLAST Databases | makeblastdb |
