Package: rBLAST 1.1.1

rBLAST: R Interface for the Basic Local Alignment Search Tool

Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Authors:Michael Hahsler [aut, cre], Nagar Anurag [aut]

rBLAST_1.1.1.tar.gz
rBLAST_1.1.1.zip(r-4.5)rBLAST_1.1.1.zip(r-4.4)rBLAST_1.1.1.zip(r-4.3)
rBLAST_1.1.1.tgz(r-4.4-any)rBLAST_1.1.1.tgz(r-4.3-any)
rBLAST_1.1.1.tar.gz(r-4.5-noble)rBLAST_1.1.1.tar.gz(r-4.4-noble)
rBLAST_1.1.1.tgz(r-4.4-emscripten)rBLAST_1.1.1.tgz(r-4.3-emscripten)
rBLAST.pdf |rBLAST.html
rBLAST/json (API)
NEWS

# Install rBLAST in R:
install.packages('rBLAST', repos = c('https://mhahsler.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mhahsler/rblast/issues

On BioConductor:rBLAST-1.1.1(bioc 3.20)rBLAST-1.0.0(bioc 3.19)

bioconductor-packagebioconductorbioinformaticsblast-search

6 exports 101 stars 4.29 score 50 dependencies

Last updated 2 months agofrom:39e28cec59647b0ff7afa24c7f0472eccfcefefe

Exports:blastblast_db_cacheblast_db_getblast_helphas_blastmakeblastdb

Dependencies:askpassBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpurrrR6rlangRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc

rBLAST: R Interface for the Basic Local Alignment Search Tool

Rendered fromblast.Rmdusingknitr::rmarkdownon May 30 2024.

Last update: 2024-04-09
Started: 2024-03-22

Readme and manuals

Help Manual

Help pageTopics
Basic Local Alignment Search Tool (BLAST)BLAST blast blast_help has_blast predict.BLAST print.BLAST
Manage BLAST Database Downloads using BioCFileCacheblast_db_cache blast_db_get
Create BLAST Databasesmakeblastdb