Package: rBLAST 1.1.1

rBLAST: R Interface for the Basic Local Alignment Search Tool

Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Authors:Michael Hahsler [aut, cre], Nagar Anurag [aut]

rBLAST_1.1.1.tar.gz
rBLAST_1.1.1.zip(r-4.5)rBLAST_1.1.1.zip(r-4.4)rBLAST_1.1.1.zip(r-4.3)
rBLAST_1.1.1.tgz(r-4.4-any)rBLAST_1.1.1.tgz(r-4.3-any)
rBLAST_1.1.1.tar.gz(r-4.5-noble)rBLAST_1.1.1.tar.gz(r-4.4-noble)
rBLAST_1.1.1.tgz(r-4.4-emscripten)rBLAST_1.1.1.tgz(r-4.3-emscripten)
rBLAST.pdf |rBLAST.html
rBLAST/json (API)
NEWS

# Install 'rBLAST' in R:
install.packages('rBLAST', repos = c('https://mhahsler.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mhahsler/rblast/issues

On BioConductor:rBLAST-1.3.0(bioc 3.21)rBLAST-1.2.0(bioc 3.20)

geneticssequencingsequencematchingalignmentdataimportbioconductorbioinformaticsblast-search

7.98 score 105 stars 100 scripts 6 exports 50 dependencies

Last updated 8 months agofrom:39e28cec59. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 26 2024
R-4.5-winOKNov 26 2024
R-4.5-linuxOKNov 26 2024
R-4.4-winOKNov 26 2024
R-4.4-macOKNov 26 2024
R-4.3-winOKNov 26 2024
R-4.3-macOKNov 26 2024

Exports:blastblast_db_cacheblast_db_getblast_helphas_blastmakeblastdb

Dependencies:askpassBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpurrrR6rlangRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc

rBLAST: R Interface for the Basic Local Alignment Search Tool

Rendered fromblast.Rmdusingknitr::rmarkdownon Nov 26 2024.

Last update: 2024-04-09
Started: 2024-03-22

Readme and manuals

Help Manual

Help pageTopics
Basic Local Alignment Search Tool (BLAST)BLAST blast blast_help has_blast predict.BLAST print.BLAST
Manage BLAST Database Downloads using BioCFileCacheblast_db_cache blast_db_get
Create BLAST Databasesmakeblastdb