{
  "_id": "6a4a2677218ced0149572575",
  "Package": "rBLAST",
  "Title": "R Interface for the Basic Local Alignment Search Tool",
  "Description": "Seamlessly interfaces the Basic Local Alignment Search\nTool (BLAST) running locally to search genetic sequence data\nbases. This work was partially supported by grant no.\nR21HG005912 from the National Human Genome Research Institute.",
  "Version": "1.3.1",
  "Date": "2025-01-06",
  "Authors@R": "c(person(\"Michael\", \"Hahsler\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mhahsler@lyle.smu.edu\",\ncomment = c(ORCID = \"0000-0003-2716-1405\")),\nperson(\"Nagar\", \"Anurag\",\nrole = \"aut\"))",
  "biocViews": "Genetics, Sequencing, SequenceMatching, Alignment,\nDataImport",
  "URL": "https://github.com/mhahsler/rBLAST",
  "BugReports": "https://github.com/mhahsler/rBLAST/issues",
  "SystemRequirements": "ncbi-blast+",
  "License": "GPL-3",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "Roxygen": "list(markdown = TRUE)",
  "Config/pak/sysreqs": "libicu-dev libssl-dev zlib1g-dev",
  "Repository": "https://mhahsler.r-universe.dev",
  "Date/Publication": "2025-10-07 18:43:11 UTC",
  "RemoteUrl": "https://github.com/mhahsler/rBLAST",
  "RemoteRef": "HEAD",
  "RemoteSha": "9cb5287309776457794902f84e448649a772c1d2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-08 08:35:28 UTC",
    "User": "root"
  },
  "Author": "Michael Hahsler [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-2716-1405>),\nNagar Anurag [aut]",
  "Maintainer": "Michael Hahsler <mhahsler@lyle.smu.edu>",
  "_user": "mhahsler",
  "_type": "src",
  "_file": "rBLAST_1.3.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/9cca92312322eb76028fcf1832da3e3e7ce77d22886473b9c4be9092ab2d35b4",
  "_filesize": 129512,
  "_sha256": "9cca92312322eb76028fcf1832da3e3e7ce77d22886473b9c4be9092ab2d35b4",
  "_expires": "2026-10-13T09:40:04.000Z",
  "_created": "2026-06-08T08:35:28.000Z",
  "_published": "2026-07-05T09:40:07.451Z",
  "_jobs": [
    {
      "job": 85211591350,
      "time": 168,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7475230239"
    },
    {
      "job": 85211591456,
      "time": 164,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475228901"
    },
    {
      "job": 85211591493,
      "time": 118,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7475212926"
    },
    {
      "job": 85211591543,
      "time": 169,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475230172"
    },
    {
      "job": 85211591351,
      "time": 229,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475171459"
    },
    {
      "job": 85211591422,
      "time": 133,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475218166"
    },
    {
      "job": 85211591467,
      "time": 99,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7475206709"
    },
    {
      "job": 85211591607,
      "time": 114,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7475212152"
    },
    {
      "job": 85211591356,
      "time": 110,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475210530"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/mhahsler/actions/runs/27125497346",
  "_status": "success",
  "_upstream": "https://github.com/mhahsler/rBLAST",
  "_commit": {
    "id": "9cb5287309776457794902f84e448649a772c1d2",
    "author": "mhahsler <michael@hahsler.net>",
    "committer": "mhahsler <michael@hahsler.net>",
    "message": "Added a note on how slow the -remote option is.\n",
    "time": 1759862591
  },
  "_maintainer": {
    "name": "Michael Hahsler",
    "email": "mhahsler@lyle.smu.edu",
    "login": "mhahsler",
    "description": "I develop packages for AI, ML, and Data Science.",
    "uuid": 14900595,
    "orcid": "0000-0003-2716-1405"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Biostrings",
      "version": ">= 2.26.2",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "BiocFileCache",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "mhahsler",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-27",
      "n": 2
    },
    {
      "week": "2025-41",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.9.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.8.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "genetics",
    "sequencing",
    "sequencematching",
    "alignment",
    "dataimport",
    "bioconductor",
    "bioinformatics",
    "blast-search"
  ],
  "_stars": 114,
  "_contributors": [
    {
      "user": "mhahsler",
      "count": 64,
      "uuid": 14900595
    },
    {
      "user": "jwokaty",
      "count": 4,
      "uuid": 1744257
    },
    {
      "user": "jpquast",
      "count": 1,
      "uuid": 59307482
    },
    {
      "user": "ts404",
      "count": 1,
      "uuid": 10216013
    }
  ],
  "_userbio": {
    "uuid": 14900595,
    "type": "user",
    "name": "Michael Hahsler",
    "description": "I develop packages for AI, ML, and Data Science."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rBLAST"
  },
  "_devurl": "https://github.com/mhahsler/rblast",
  "_searchresults": 153,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/rBLAST.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mhahsler/rblast",
  "_realowner": "bioc",
  "_cranurl": true,
  "_exports": [
    "blast",
    "blast_db_cache",
    "blast_db_get",
    "blast_help",
    "has_blast",
    "makeblastdb"
  ],
  "_help": [
    {
      "page": "blast",
      "title": "Basic Local Alignment Search Tool (BLAST)",
      "concept": [
        "blast"
      ],
      "topics": [
        "BLAST",
        "blast",
        "blast_help",
        "has_blast",
        "predict.BLAST",
        "print.BLAST"
      ]
    },
    {
      "page": "blast_db_cache",
      "title": "Manage BLAST Database Downloads using BioCFileCache",
      "concept": [
        "blast"
      ],
      "topics": [
        "blast_db_cache",
        "blast_db_get"
      ]
    },
    {
      "page": "makeblastdb",
      "title": "Create BLAST Databases",
      "concept": [
        "blast"
      ],
      "topics": [
        "makeblastdb"
      ]
    }
  ],
  "_readme": "https://github.com/mhahsler/rBLAST/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "BiocFileCache",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "dplyr",
    "fastmap",
    "filelock",
    "generics",
    "glue",
    "httr2",
    "IRanges",
    "lifecycle",
    "magrittr",
    "memoise",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "blast.Rmd",
      "filename": "blast.html",
      "title": "rBLAST: R Interface for the Basic Local Alignment Search Tool",
      "author": "Michael Hahsler and Anurag Nagar",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "System requirements",
        "Examples",
        "Use an existing database",
        "Create a custom BLAST database",
        "SessionInfo"
      ],
      "created": "2024-03-22 17:26:19",
      "modified": "2024-04-09 14:56:58",
      "commits": 4
    }
  ],
  "_score": 8.195838791593397,
  "_indexed": false,
  "_nocasepkg": "rblast",
  "_universes": [
    "mhahsler"
  ],
  "_indexurl": "https://bioc.r-universe.dev/rBLAST",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-06-08T08:37:48.000Z",
      "distro": "noble",
      "commit": "9cb5287309776457794902f84e448649a772c1d2",
      "fileid": "https://r2.ropensci.org/478c5cd1a9d165b570498f1b919518726cb133899b6177172e35fa6f0924106d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhahsler/actions/runs/27125497346"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-06-08T08:37:44.000Z",
      "distro": "noble",
      "commit": "9cb5287309776457794902f84e448649a772c1d2",
      "fileid": "https://r2.ropensci.org/7865f163c2b2549c361a6d87e4eb15e6e99d6591d707fd166d0033220f72b99b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhahsler/actions/runs/27125497346"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.1",
      "date": "2026-06-08T08:37:10.000Z",
      "commit": "9cb5287309776457794902f84e448649a772c1d2",
      "fileid": "https://r2.ropensci.org/dc7b8e1bc2a77b33fc9ccf27f77796050e7afb010c22236bcdfec3e6d50d43bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhahsler/actions/runs/27125497346"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.3.1",
      "date": "2026-06-08T08:37:43.000Z",
      "commit": "9cb5287309776457794902f84e448649a772c1d2",
      "fileid": "https://r2.ropensci.org/de9c207f40c88286ca89705a75a263de4da2e21ae55495475a8ae53d1657a9c3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhahsler/actions/runs/27125497346"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3.1",
      "date": "2026-06-08T08:38:02.000Z",
      "commit": "9cb5287309776457794902f84e448649a772c1d2",
      "fileid": "https://r2.ropensci.org/4fc1a2025f792a24d22f4c5252877b7dd254284b4935853d049c1aad0307abb7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mhahsler/actions/runs/27125497346"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-06-08T08:36:52.000Z",
      "commit": "9cb5287309776457794902f84e448649a772c1d2",
      "fileid": "https://r2.ropensci.org/992168d22f374d9fe14b14524fad2ca347ff659b506c0eddc07efdd9c692a2f6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhahsler/actions/runs/27125497346"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-06-08T08:36:49.000Z",
      "commit": "9cb5287309776457794902f84e448649a772c1d2",
      "fileid": "https://r2.ropensci.org/bbdbaa438fd8253734f7512a63f4b2fad5dc3be739eb7381d1d9cac38bb4b7f9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhahsler/actions/runs/27125497346"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-06-08T08:36:50.000Z",
      "commit": "9cb5287309776457794902f84e448649a772c1d2",
      "fileid": "https://r2.ropensci.org/f95b982e52e7772fd3de65cc6d780c75f4d4061608853afc5b74f87b3ab9040e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhahsler/actions/runs/27125497346"
    }
  ]
}